aboutsummaryrefslogtreecommitdiff
diff options
context:
space:
mode:
-rw-r--r--snakemake.el40
1 files changed, 27 insertions, 13 deletions
diff --git a/snakemake.el b/snakemake.el
index fb8d59d..f8f636b 100644
--- a/snakemake.el
+++ b/snakemake.el
@@ -444,6 +444,13 @@ targets."
(defvar-local snakemake-graph-id nil)
+(defun snakemake-graph--display ()
+ (require 'image)
+ (if (not (image-type-available-p 'imagemagick))
+ (find-file (snakemake-graph-save))
+ (image-mode)
+ (pop-to-buffer (current-buffer))))
+
;;;###autoload
(defun snakemake-graph (rules &optional rule-graph)
"Display graph for DAG of RULES.
@@ -470,10 +477,9 @@ $ snakemake --{dag,rulegraph} -- RULES | display"
(apply #'call-process snakemake-program nil t nil
(if rule-graph "--rulegraph" "--dag")
rules))
- (image-mode)
(snakemake-graph-mode)
(setq snakemake-graph-id (mapconcat #'file-name-nondirectory rules "-"))
- (pop-to-buffer (current-buffer)))))
+ (snakemake-graph--display))))
;;;###autoload
(defun snakemake-graph-this-file (&optional rule-graph directory)
@@ -521,32 +527,40 @@ $ snakemake -s <current file> --{dag,rulegraph} | display"
(if rule-graph "--rulegraph" "--dag")
"--snakefile" file)))
(if (zerop ret-val)
- (progn (image-mode)
- (snakemake-graph-mode)
- (setq snakemake-graph-id file))
+ (progn (snakemake-graph-mode)
+ (setq snakemake-graph-id file)
+ (snakemake-graph--display))
(goto-char (point-min))
- (insert (format "Error in snakemake call from %s:\n\n" dir)))
- (pop-to-buffer (current-buffer)))))
+ (insert (format "Error in snakemake call from %s:\n\n" dir))
+ (pop-to-buffer (current-buffer))))))
(defun snakemake-graph-save ()
"Save graph in current buffer to file.
+
The graph will be processed by `snakemake-dot-program'. The
default extension of the output file is
`snakemake-graph-default-extension', but you can enter any
-extension that the dot program supports."
+extension that the dot program supports.
+
+Return the name of the output file."
(interactive)
(unless snakemake-graph-id
(user-error "Not in Snakemake graph buffer"))
(let ((file (read-file-name "To file: " nil nil nil
(concat snakemake-graph-id
snakemake-graph-default-extension))))
- (unless (or (string-match-p "\\`\\s-*\\'" file)
- (and (file-exists-p file)
- (not (y-or-n-p
- (concat file " already exists. Overwrite?")))))
+ (cond
+ ((string-match-p "\\`\\s-*\\'" file)
+ (user-error "No output file specified"))
+ ((and (file-exists-p file)
+ (not (y-or-n-p
+ (concat file " already exists. Overwrite?"))))
+ (user-error "Aborted"))
+ (t
(call-process-region (point-min) (point-max)
snakemake-dot-program nil (list :file file) nil
- "-T" (file-name-extension file)))))
+ "-T" (file-name-extension file))
+ file))))
(defvar snakemake-graph-mode-map
(let ((map (make-sparse-keymap)))