1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
|
NEWS -- history of user-visible changes -*- mode: org; -*-
* master (unreleased)
** New features
- ~snakemake-popup~ now includes ~--use-conda~.
- The 'group' keyword (new in Snakemake v5.0) is now recognized.
* v1.4.0
** New features
- The 'cwl' keyword (new in Snakemake v4.8.0), 'pipe' (new in
Snakemake v5.2.0), 'directory' (new in Snakemake v5.2.0), and
'ancient' built-in are now recognized.
** Other changes
- The minimum Emacs version is now specified as 24.5. Although the
previous specification was a looser "24", Snakemake's indentation
function is incompatible with Emacs 24.4 and below.
* v1.3.0
** New features
- The 'singularity' keyword (new in Snakemake v4.2.0) is now
recognized.
- ".smk" has been added as a suffix for Snakemake files.
* v1.2.0
** New features
- ~snakemake-popup~ commands learned to call Snakemake through a
terminal rather than through ~compile~. This allows a persistent
environment to be maintained between Snakemake calls, which is
useful for running Snakemake in isolated environments created by
tools like Guix.
* v1.1.0
** New features
- The 'conda' keyword (new in Snakemake v3.9.0) is now recognized.
* v1.0.0
** New features
- The 'wildcard_constraints' keyword (new in Snakemake v3.8.0) is now
recognized.
* v0.5.0
** New features
- New command ~snakemake-graph-this-file~ displays the graph for the
first rule of the current file. Similar functionality is available
from ~snakemake-graph~, which supports graphing any target in the
file, but you may find the new command useful if your workflow
involves frequently using Snakemake's ~--snakefile~ option.
- New function ~snakemake-mode-setup-mmm~ configures MMM mode to
highlight string-embedded R code. (Contributed by Endre Bakken
Stovner.)
- ".rules" has been added as a suffix for Snakemake files.
- ~beginning-of-defun~ and ~end-of-defun~ implementations for rule
blocks are now defined.
- Rule blocks are now recognized by ~add-log-current-defun~.
* v0.4.0
** New features
- New library snakemake.el provides a popup interface for running
Snakemake from Emacs.
- New command ~snakemake-graph~ displays the graph of dependencies for
a rule. (Thanks to Endre Bakken Stovner for the idea and initial
implementation.)
- ".snakefile" has been added as a suffix for Snakemake files.
- Anonymous rule blocks are now supported.
- The 'wrapper' keyword is now recognized.
* v0.3.0
** New features
- The keywords 'configfile', 'onsuccess', 'onerror', 'log', and
'benchmark', 'script', 'shadow', as well as the 'touch' function,
are now recognized.
- Indentation for field values starting on the line below a field key
is now supported. New variable ~snakemake-indent-value-offset~
controls the offset for the value and replaces the variable
~snakemake-indent-run-offset~. If these values are continued on
another line, indentation cycling now includes a step that indents
according to Python mode.
- ~snakemake-compile-rule~ can now pass the '--touch' flag to
snakemake.
- The Imenu index now includes Python mode items in addition to rule
blocks.
- Errors in Snakefiles are now highlighted in complilation buffers.
* v0.2.0
** New features
- Both the executable and flags for the Snakemake ~compile-command~ are
now customizable.
- New command ~snakemake-compile-rule~ runs Snakemake with the rule at
point as the target.
- Subworkflow blocks are now supported.
- The 'ruleorder' keyword is now recognized.
|