blob: 01fa7f1a0a221e5459bd2b9563ce8c847772aa35 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
|
;;; km-snakemake.el --- Extensions for Snakemake mode
;; Copyright (C) 2012-2016 Kyle Meyer <kyle@kyleam.com>
;; Author: Kyle Meyer <kyle@kyleam.com>
;; URL: https://github.com/kyleam/emacs.d
;; This program is free software; you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation, either version 3 of the License, or
;; (at your option) any later version.
;; This program is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
;; GNU General Public License for more details.
;; You should have received a copy of the GNU General Public License
;; along with this program. If not, see <http://www.gnu.org/licenses/>.
;;; Code:
(require 'projectile)
(require 'km-projectile)
(require 'snakemake-mode)
;;;###autoload
(defun km/snakemake-compile-project-file (jobs)
"Run Snakemake to produce project file at point.
The numeric prefix JOBS controls the number of jobs that
Snakemake runs (defaults to 1). If JOBS is zero, perform a dry
run. If JOBS is negative, just touch the output files."
(interactive "p")
(let* ((fname (or (km/project-filename-at-point)
(read-file-name "File: ")))
(job-flag (cond
((> jobs 0) (format " -j%s " jobs))
((zerop jobs) " -n ")
(t " -t ")))
(compile-command (concat (snakemake-compile-command) job-flag
fname))
(default-directory (projectile-project-root)))
(call-interactively 'compile)))
;;;###autoload
(defun km/snakemake-compile-project-rule ()
"Run `snakemake-compile-rule' from project root."
(interactive)
(let ((default-directory (projectile-project-root)))
(call-interactively #'snakemake-compile-rule)))
(provide 'km-snakemake)
;;; km-snakemake.el ends here
|