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(add-to-list 'load-path "~/src/emacs/snakemake-mode/")
(require 'snakemake-mode-autoloads)
(autoload 'snakemake-compile-command "snakemake-mode")
(setq snakemake-compile-command-options '("-p"))
;; Although `compile-command' and `imenu-create-index-function' are
;; set when snakemake-mode is derived from Python mode, I need to
;; define them again here because I have a Python mode hook overrides
;; the Python versions.
(add-hook 'snakemake-mode-hook #'km/snakemake-set-local-vars)
(defun km/snakemake-set-local-vars ()
(set (make-local-variable 'compile-command)
(snakemake-compile-command))
(set (make-local-variable 'imenu-create-index-function)
#'snakemake-imenu-create-index))
(defun km/snakemake-compile-project-file (jobs)
"Run Snakemake to produce project file at point.
The numeric prefix JOBS controls the number of jobs that
Snakemake runs (defaults to 1). If JOBS is zero, perform a dry
run. If JOBS is negative, just touch the output files."
(interactive "p")
(let* ((fname (or (km/project-filename-at-point)
(read-file-name "File: ")))
(job-flag (cond
((> jobs 0) (format " -j%s " jobs))
((zerop jobs) " -n ")
(t " -t ")))
(compile-command (concat (snakemake-compile-command) job-flag
fname))
(default-directory (projectile-project-root)))
(call-interactively 'compile)))
(defun km/snakemake-compile-project-rule ()
"Run `snakemake-compile-rule' from project root."
(interactive)
(let ((default-directory (projectile-project-root)))
(call-interactively #'snakemake-compile-rule)))
(after 'init-external
(define-key km/compile-map "b"
'km/snakemake-compile-project-rule)
(define-key km/compile-map "p"
'km/snakemake-compile-project-file))
(provide 'init-snakemake)
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