blob: c3c4a7ff965f8a2fbf52e7eaddd5c7bbd6883078 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
|
(require 'snakemake-mode-autoloads)
(setq snakemake-compile-command-options '("-p"))
;; Although `compile-command' is set when snakemake-mode is derived from
;; Python mode, I need to define it again here because I have a Python
;; mode hook that sets `compile-command', which overides the snakemake
;; version.
(add-hook 'snakemake-mode-hook
(lambda ()
(set (make-local-variable 'compile-command)
(snakemake-compile-command))))
(defun km/snakemake-compile-project-file (jobs)
"Run Snakemake to produce project file at point.
The numeric prefix JOBS controls the number of jobs that
Snakemake runs (defaults to 1). If JOBS is zero, perform a dry
run."
(interactive "p")
(let* ((fname (or (km/project-filename-at-point)
(read-file-name "File: ")))
(job-flag (if (zerop jobs)
" -n "
(format " -j%s " jobs)))
(compile-command (concat (snakemake-compile-command) job-flag
fname))
(default-directory (projectile-project-root)))
(call-interactively 'compile)))
(defun km/snakemake-compile-project-rule ()
"Run `snakemake-compile-rule' from project root."
(interactive)
(let ((default-directory (projectile-project-root)))
(call-interactively #'snakemake-compile-rule)))
(autoload 'snakemake-compile-command "snakemake-mode")
(after 'init-external
(define-key km/compile-map "p"
'km/snakemake-compile-project-file)
(define-key km/compile-map "b"
'km/snakemake-compile-project-rule))
(provide 'init-snakemake)
|