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2017-03-26Add a terminal interface for running SnakemakeKyle Meyer
Snakemake commands are currently executed through compile. In general, this works fine, but it doesn't work well when Snakemake should be executed in a different environment than the one in which the current Emacs session was started. For example, Guix commands like 'guix environment ...' manipulate environmental variables to expose particular software. With the current setup, snakemake-program could be set to a wrapper script that creates the environment and then calls Snakemake: guix environment -l manifest.scm --ad-hoc snakemake --pure \ -- snakemake $@ But the disadvantage of this approach is that it adds the environmental setup time to _each_ Snakemake call. To work better with tools like Guix, let's add an alternative interface that allows commands to be executed in a terminal session. Instead of the above script, snakemake-shell-file-name can be set to a script with guix environment -l manifest.scm --ad-hoc snakemake --pure Now the environmental setup cost is limited to starting the terminal.
2016-11-22Bump versionv1.1.0Kyle Meyer
2016-11-15Support 'conda' keywordKyle Meyer
2016-11-10Bump versionv1.0.0Kyle Meyer
2016-10-31NEWS: Touch up spacingKyle Meyer
2016-09-02Support 'wildcard_constraints' keywordKyle Meyer
wildcard_constraints was added in Snakemake v3.8.0 (feb6aee).
2016-05-17Bump versionv0.5.0Kyle Meyer
2016-05-11Define function for add-log-current-defun-functionKyle Meyer
2016-05-11Define defun navigation commandsKyle Meyer
2016-05-03mode: Add ".rules" as a file suffixKyle Meyer
Closes #15.
2016-05-03NEWS: Mention snakemake-mode-setup-mmmKyle Meyer
2016-04-19Add snakemake-graph-this-file commandKyle Meyer
2016-04-18Bump versionv0.4.0Kyle Meyer
2016-04-17Add snakemake-graph commandKyle Meyer
Re: #9
2016-04-16Add wrapper keywordKyle Meyer
This keyword was added in Snakemake version 3.5.5.
2016-04-16Support anonymous rule blocksKyle Meyer
2016-03-12mode: Add ".snakefile" as a file suffixKyle Meyer
https://groups.google.com/d/msg/snakemake/segLE-RlV_s/nQCTxH_TJwAJ
2016-02-28Add popup interface for compilationKyle Meyer
2016-02-07Bump versionv0.3.0Kyle Meyer
2016-02-07Add 'script' keywordKyle Meyer
This keyword was added in Snakemake 3.5.
2016-02-07NEWS: Mention 'shadow' keywordKyle Meyer
2016-02-07NEWS: Add headerKyle Meyer
2016-02-07NEWS: Use ~ code tagsKyle Meyer
2016-01-17Highlight Snakefile errors in compilation buffersKyle Meyer
2015-06-10Recognize touch functionKyle Meyer
The touch flag was just recently documented: https://groups.google.com/d/msg/Snakemake/ZxUo20DV2KE/0S1rBj0XzwQJ
2015-06-03Coexist with Python mode Imenu itemsKyle Meyer
2015-06-03Expose --touch flag in snakemake-compile-ruleKyle Meyer
2015-03-07Rework indentationKyle Meyer
- Change continued field values to support Python indentation. This is useful when the value is using something like format (but only applies to naked field keys). - Don't move back to the start of the line when in a continued field value. - When on the first line of block, only indent to main offset. - Move to current indentation if point is before it. Unless there is one possible value for indentation, don't adjust indentation any further.
2015-03-06Add 'log' and 'benchmark' keywordsKyle Meyer
2015-03-05Indent field values that start on their own lineKyle Meyer
Previously, indentation was handled only for the first line following a run value. Extend this to support any field value that starts on the line below a field key, since that is valid syntax.
2015-03-05Add onsuccess and onerror keywordsKyle Meyer
2015-03-05Add configfile as top-level commandKyle Meyer
This was added in version 3.1.
2014-12-14Bump versionv0.2.0Kyle Meyer
2014-11-16Add snakemake-compile-rule commandKyle Meyer
2014-11-16Add NEWS fileKyle Meyer
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