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2020-11-01docs: Update stale Snakemake linksKyle Meyer
2020-11-01mode: Add "container" and "envmodules" keywordsKyle Meyer
Register "container" as both a field key and a top-level command because an example of both is present in the Snakemake docs. Reported-by: Nicholas Knoblauch <knoblauch.nicholas@gene.com> Message-Id: <87eelcak64.fsf@kyleam.com>
2020-11-01travis: Turn off emails about successful runsKyle Meyer
2020-11-01travis: Bump Python version to 3.7Kyle Meyer
The Travis builds have started to fail because Snakemake now requires at least Python 3.7.
2020-11-01NEWS: Reformat entry about new keywordsKyle Meyer
More are on the way.
2020-07-19mode: Add "envvars" to list of top-level commandsKyle Meyer
2020-04-17mode: Add "cache" to the list of field keysKyle Meyer
2020-04-16README: Revise contributing sectionKyle Meyer
2020-04-16issue_template.md: Tweak wordingKyle Meyer
2020-04-16issue_template.md: ReflowKyle Meyer
I went with the long lines because that will be rendered more nicely by GitHub. But this is shown in the text field so it doesn't matter.
2020-04-13Merge branch 'readme-updates'Kyle Meyer
2020-04-13README: Add a contributing sectionKyle Meyer
2020-04-13README: Rewrite as a plain text fileKyle Meyer
2020-04-13Rename READMEKyle Meyer
2020-04-13README: Update Snakemake linkKyle Meyer
2020-04-13Add COPYING fileKyle Meyer
I shouldn't rely on the license notice at the top of the files.
2020-04-13Redirect those opening issues/PRs on GitHubKyle Meyer
2020-04-13Update links for repo's new homeKyle Meyer
2020-02-22Release 1.7.0v1.7.0Kyle Meyer
2020-02-21Merge branch 'emacs27-font-lock'Kyle Meyer
2020-02-21font-lock: Adjust python-font-lock-keywords handling for Emacs 27Kyle Meyer
In Emacs 27, specifically 36b64e087e (Add 'font-lock-maximum-decoration' levels for Python, 2018-07-19), python-font-lock-keywords was changed to a list of symbols that define different fontification levels, so we can no longer simply tack snakemake-font-lock-keywords onto it. Instead define a set of levels that mirrors Python mode's. For Snakemake mode, the same decoration is used for all levels, but at least we will honor the level of decoration that the user has set for Python. Reported-by: Nicholas Knoblauch <nwknoblauch@gmail.com> Closes #29.
2020-02-21font-lock: Pull python-font-lock-keywords into snakemake'sKyle Meyer
This will make it easier to work around a change to python-font-lock-keywords in Emacs 27.
2020-02-21mode: Retain non-keyword parts of inherited font-lock-defaultsKyle Meyer
snakemake-font-lock-keywords is extended with python-font-lock-keywords, but the non-keyword bits that python.el defines for font-lock-defaults are discarded. Keep those too because python.el sets a value for font-lock-syntactic-face-function.
2020-02-21mode: Add "multiext" to list of built-insKyle Meyer
2020-02-21NEWS: Delete second-level headingsKyle Meyer
There are few enough entries in each release that this extra structure isn't really helpful. Plus, some things that are labeled as "new features", like recognizing keywords for fontification, seem a bit silly to call a feature, but I can't think of a better heading for them.
2020-02-21Update copyright yearsKyle Meyer
2019-09-11Release 1.6.0v1.6.0Kyle Meyer
2019-09-11guix-snakemake-environment: Update stale commentKyle Meyer
This should have been adjusted in a5f868f (Change 'guix environment' snippet to use --manifest, 2018-09-01).
2019-04-11mode: Add checkpoint supportKyle Meyer
2018-10-07Release 1.5.0v1.5.0Kyle Meyer
2018-10-04snakemake-font-lock-keywords: Increase command precedenceKyle Meyer
With the addition of 'report', the built-in names and command names are no longer disjoint sets. All occurrences of 'report' are fontified as a built-in because the built-in regexp is a substring of the command regexp. Move the command regexp before the built-in regexp so that the 'report:' command is highlighted as a command.
2018-10-04mode: Add "report" to list of field keys and built-insKyle Meyer
2018-10-04mode: Add "localrules" as to the list of top-level commandsKyle Meyer
This has been around forever.
2018-09-22snakemake-popup: Add --use-condaKyle Meyer
2018-09-18mode: Add "group" to the list of field keysKyle Meyer
2018-09-01Prefer https linksKyle Meyer
2018-09-01Change 'guix environment' snippet to use --manifestKyle Meyer
'guix environment' accepts a manifest as of 267379f85 (environment: Add --manifest option., 2018-02-15). Declaring a set of dependencies via --manifest is more straightforward than doing so with --load, so suggest --manifest instead.
2018-09-01snakemake-term-start: Reorder arguments in docstring's guix commandKyle Meyer
Match the order given in guix-snakemake-environment.
2018-09-01Adjust shebang in guix-snakemake-environment scriptKyle Meyer
Using "/usr/bin/env" there is silly. We can rely on "/bin/sh" being present more than "/usr/bin/env".
2018-08-16Release 1.4.0v1.4.0Kyle Meyer
2018-08-16mode: Add "pipe" to the list of built-insKyle Meyer
2018-08-16mode: Add "directory" to the list of built-insKyle Meyer
2018-08-16Change Emacs requirement for Emacs 24 to Emacs 24.5Kyle Meyer
python.el changed its indentation engine in Emacs 24.5. We rely on a python-indent-calculate-indentation that is specific for the newer version. Re: #28
2018-08-16Silence byte-compilerKyle Meyer
2018-08-16snakemake-mode-setup-mmm: Fix quoting in docstringKyle Meyer
2018-05-19mode: Add "singularity" as to the list of top-level commandsKyle Meyer
In addition the per-rule singularity field, Snakemake supports a top-level global directive (since v4.8.0, I think).
2018-05-19mode: Add "ancient" as to the list of built-insKyle Meyer
This has been around since Snakemake 3.9.0.
2018-03-20mode: Add "cwl" to the list of field keysKyle Meyer
2018-01-28Bump versionv1.3.0Kyle Meyer
2018-01-25mode: Add "singularity" to the list of field keysKyle Meyer
Closes #24.
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