| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-09-01 | snakemake-check-target: Adjust for upstream output | Kyle Meyer | |
| As of Snakemake v3.8.0, using a wildcard rule name signals a key error: Traceback (most recent call last): File "/usr/lib/python3.5/site-packages/snakemake/io.py", line 401, in format_match value = wildcards[name] KeyError: 'name' | |||
| 2016-09-01 | Change approach to handling errors | Kyle Meyer | |
| The approach from 7b210fc (Ignore standard error stream when digesting output, 2016-09-01) does not work well because, depending on the snakemake subcommand, the text of interest may be in the stderr stream. Instead, use lines with spaces as a way to detect non-target lines. | |||
| 2016-09-01 | snakemake-check-target: Relax output order assumption | Kyle Meyer | |
| 2016-09-01 | snakemake-check-target: Pull out regexp | Kyle Meyer | |
| 2016-09-01 | Ignore standard error stream when digesting output | Kyle Meyer | |
| Avoid including warnings as targets. | |||
| 2016-06-13 | snakemake-compile-targets: Update compile-history | Kyle Meyer | |
| 2016-05-27 | Bump versionv0.5.1 | Kyle Meyer | |
| 2016-05-26 | Add snakemake-rx macro | Kyle Meyer | |
| 2016-05-25 | snakemake-rule-or-subworkflow-re: Simplify | Kyle Meyer | |
| 2016-05-24 | indentation: Account for trailing comments | Kyle Meyer | |
| 2016-05-24 | Fix indentation for continued lines under naked rule | Kyle Meyer | |
| 2016-05-17 | Bump versionv0.5.0 | Kyle Meyer | |
| 2016-05-16 | Don't use prog-widen and prog-first-column | Kyle Meyer | |
| These functions aren't in Emacs 24.* and have been removed from the emacs-25 branch. See Emacs 124c486 (Remove prog-indentation-context, 2016-03-28). | |||
| 2016-05-11 | Extend snakemake-block-bounds function | Kyle Meyer | |
| Include name and block type. | |||
| 2016-05-11 | Fix add-log-current-defun-function assignment | Kyle Meyer | |
| 2016-05-11 | Define function for add-log-current-defun-function | Kyle Meyer | |
| 2016-05-11 | Define defun navigation commands | Kyle Meyer | |
| 2016-05-11 | Add snakemake-block-bounds function | Kyle Meyer | |
| 2016-05-11 | Merge branch 'indentation-rewrite' | Kyle Meyer | |
| 2016-05-11 | Rework indentation | Kyle Meyer | |
| The previous implementation did not support some legal syntax: * spaces between rule lines * indented rule blocks (e.g., a rule defined under an if-statement) * top-level commands like "include" when the value started on the second line (re: #16) | |||
| 2016-05-04 | snakemake-toplevel-command-re: Allow leading spaces | Kyle Meyer | |
| Fixes #17. | |||
| 2016-05-03 | Be more lenient with spacing in regexps | Kyle Meyer | |
| 2016-05-03 | Allow spaces after rule/subworkflow name | Kyle Meyer | |
| 2016-05-03 | mode: Add ".rules" as a file suffix | Kyle Meyer | |
| Closes #15. | |||
| 2016-05-03 | NEWS: Mention snakemake-mode-setup-mmm | Kyle Meyer | |
| 2016-04-22 | Declare MMM mode functions | Kyle Meyer | |
| 2016-04-22 | Syntax-highlight embedded R code | Endre Bakken Stovner | |
| 2016-04-19 | Rename snakemake-graph-rule to snakemake-graph-id | Kyle Meyer | |
| With introduction of snakemake-graph-this-file, this variable isn't restricted to rule names. | |||
| 2016-04-19 | Add snakemake-graph-this-file command | Kyle Meyer | |
| 2016-04-19 | snakemake-graph: Fix docstring line break | Kyle Meyer | |
| 2016-04-19 | graph: Correct docstrings | Kyle Meyer | |
| 2016-04-19 | Makefile: Fix autoload dependencies | Kyle Meyer | |
| 2016-04-18 | Bump versionv0.4.0 | Kyle Meyer | |
| 2016-04-17 | .travis.yml: Disable Emacs 24 | Kyle Meyer | |
| 2016-04-17 | .travis.yml: Install Snakemake | Kyle Meyer | |
| 2016-04-17 | Makefile: Pull out Emacs variable | Kyle Meyer | |
| Used by Travis make call. | |||
| 2016-04-17 | Set up Travis | Kyle Meyer | |
| 2016-04-17 | Makefile: Download dependencies | Kyle Meyer | |
| 2016-04-17 | Add helper for splitting rule lists | Kyle Meyer | |
| 2016-04-17 | Filter out anonymous rules from rule lists | Kyle Meyer | |
| 2016-04-17 | snakemake-rule-at-point: Fix anonymous rule check | Kyle Meyer | |
| 2016-04-17 | commentary: Mention how Snakefile is located | Kyle Meyer | |
| 2016-04-17 | commentary: Add graph commands | Kyle Meyer | |
| 2016-04-17 | Merge branch 'km/graph' | Kyle Meyer | |
| 2016-04-17 | Add snakemake-graph-save command | Kyle Meyer | |
| Re: #9 | |||
| 2016-04-17 | Add snakemake-graph command | Kyle Meyer | |
| Re: #9 | |||
| 2016-04-16 | Add wrapper keyword | Kyle Meyer | |
| This keyword was added in Snakemake version 3.5.5. | |||
| 2016-04-16 | Support anonymous rule blocks | Kyle Meyer | |
| 2016-04-15 | mode: Unset indent-region-function | Kyle Meyer | |
| Don't use python-indent-region for indent-region-function. At first glance, setting indent-region-function to nil (that is, running indent-according-to-mode on each line) seems to indent rule blocks fine, though it will probably fail on more complex "run" values. However, this does mean that python-indent-region is no longer used when indent-region is called with a region that doesn't include a rule block, so it's probably worth adding a snakemake-indent-region function that calls python-indent-region in this case. Re: #8 | |||
| 2016-03-12 | mode: Add ".snakefile" as a file suffix | Kyle Meyer | |
| https://groups.google.com/d/msg/snakemake/segLE-RlV_s/nQCTxH_TJwAJ | |||