diff options
Diffstat (limited to 'snakemake.el')
| -rw-r--r-- | snakemake.el | 40 |
1 files changed, 27 insertions, 13 deletions
diff --git a/snakemake.el b/snakemake.el index fb8d59d..f8f636b 100644 --- a/snakemake.el +++ b/snakemake.el @@ -444,6 +444,13 @@ targets." (defvar-local snakemake-graph-id nil) +(defun snakemake-graph--display () + (require 'image) + (if (not (image-type-available-p 'imagemagick)) + (find-file (snakemake-graph-save)) + (image-mode) + (pop-to-buffer (current-buffer)))) + ;;;###autoload (defun snakemake-graph (rules &optional rule-graph) "Display graph for DAG of RULES. @@ -470,10 +477,9 @@ $ snakemake --{dag,rulegraph} -- RULES | display" (apply #'call-process snakemake-program nil t nil (if rule-graph "--rulegraph" "--dag") rules)) - (image-mode) (snakemake-graph-mode) (setq snakemake-graph-id (mapconcat #'file-name-nondirectory rules "-")) - (pop-to-buffer (current-buffer))))) + (snakemake-graph--display)))) ;;;###autoload (defun snakemake-graph-this-file (&optional rule-graph directory) @@ -521,32 +527,40 @@ $ snakemake -s <current file> --{dag,rulegraph} | display" (if rule-graph "--rulegraph" "--dag") "--snakefile" file))) (if (zerop ret-val) - (progn (image-mode) - (snakemake-graph-mode) - (setq snakemake-graph-id file)) + (progn (snakemake-graph-mode) + (setq snakemake-graph-id file) + (snakemake-graph--display)) (goto-char (point-min)) - (insert (format "Error in snakemake call from %s:\n\n" dir))) - (pop-to-buffer (current-buffer))))) + (insert (format "Error in snakemake call from %s:\n\n" dir)) + (pop-to-buffer (current-buffer)))))) (defun snakemake-graph-save () "Save graph in current buffer to file. + The graph will be processed by `snakemake-dot-program'. The default extension of the output file is `snakemake-graph-default-extension', but you can enter any -extension that the dot program supports." +extension that the dot program supports. + +Return the name of the output file." (interactive) (unless snakemake-graph-id (user-error "Not in Snakemake graph buffer")) (let ((file (read-file-name "To file: " nil nil nil (concat snakemake-graph-id snakemake-graph-default-extension)))) - (unless (or (string-match-p "\\`\\s-*\\'" file) - (and (file-exists-p file) - (not (y-or-n-p - (concat file " already exists. Overwrite?"))))) + (cond + ((string-match-p "\\`\\s-*\\'" file) + (user-error "No output file specified")) + ((and (file-exists-p file) + (not (y-or-n-p + (concat file " already exists. Overwrite?")))) + (user-error "Aborted")) + (t (call-process-region (point-min) (point-max) snakemake-dot-program nil (list :file file) nil - "-T" (file-name-extension file))))) + "-T" (file-name-extension file)) + file)))) (defvar snakemake-graph-mode-map (let ((map (make-sparse-keymap))) |