diff options
| -rwxr-xr-x | guix-snakemake-environment | 11 | ||||
| -rw-r--r-- | snakemake.el | 5 |
2 files changed, 15 insertions, 1 deletions
diff --git a/guix-snakemake-environment b/guix-snakemake-environment new file mode 100755 index 0000000..18f6c85 --- /dev/null +++ b/guix-snakemake-environment @@ -0,0 +1,11 @@ +#!/usr/bin/env sh + +### Set up a pure environment for snakemake.el commands +### +### If `snakemake-shell-file-name' is points to this file, +### `snakemake-term-start` will start a terminal with an environment +### that exposes snakemake and the dependencies defined in "guix.scm", +### which should be located in the same directory as the current +### Snakefile. + +guix environment --pure -l guix.scm --ad-hoc snakemake diff --git a/snakemake.el b/snakemake.el index ac2db17..278afcd 100644 --- a/snakemake.el +++ b/snakemake.el @@ -595,7 +595,10 @@ that starts a shell with the desired environment. For example, to set up an enviroment with Guix, `snakemake-shell-file-name' could point to a script that runs - guix environment -l guix.scm --ad-hoc snakemake --pure" + guix environment -l guix.scm --ad-hoc snakemake --pure + +The file 'guix-snakemake-environment' in Snakemake mode's source +directory can be used for this purpose." (interactive) (let ((default-directory (snakemake-snakefile-directory))) (unless (snakemake-term-process) |