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| author | Kyle Meyer <kyle@kyleam.com> | 2018-09-01 00:41:30 -0400 |
|---|---|---|
| committer | Kyle Meyer <kyle@kyleam.com> | 2018-09-01 00:47:21 -0400 |
| commit | a5f868f79d98424d59c84b17178a9356254a9504 (patch) | |
| tree | 2de23bf8a8581433cf143ecf2537b5b09fe021a1 | |
| parent | a65acf9e3bb7941cb84e4c6ac2a11236491cc1f5 (diff) | |
| download | snakemake-mode-a5f868f79d98424d59c84b17178a9356254a9504.tar.gz | |
Change 'guix environment' snippet to use --manifest
'guix environment' accepts a manifest as of 267379f85 (environment:
Add --manifest option., 2018-02-15). Declaring a set of dependencies
via --manifest is more straightforward than doing so with --load, so
suggest --manifest instead.
| -rwxr-xr-x | guix-snakemake-environment | 2 | ||||
| -rw-r--r-- | snakemake.el | 2 |
2 files changed, 2 insertions, 2 deletions
diff --git a/guix-snakemake-environment b/guix-snakemake-environment index b67ec8a..1aa003e 100755 --- a/guix-snakemake-environment +++ b/guix-snakemake-environment @@ -8,4 +8,4 @@ ### a file which should be located in the same directory as the ### current Snakefile. -guix environment --pure -l guix.scm --ad-hoc snakemake +guix environment --pure -m manifest.scm --ad-hoc snakemake diff --git a/snakemake.el b/snakemake.el index 1103ba6..bd459ed 100644 --- a/snakemake.el +++ b/snakemake.el @@ -627,7 +627,7 @@ that starts a shell with the desired environment. For example, to set up an enviroment with Guix, `snakemake-shell-file-name' could point to a script that runs - guix environment --pure -l guix.scm --ad-hoc snakemake + guix environment --pure -m manifest.scm --ad-hoc snakemake The file 'guix-snakemake-environment' in Snakemake mode's source directory can be used for this purpose." |