From b5a4676d998c846ccf6c907ad2dd13cc17574055 Mon Sep 17 00:00:00 2001
From: Kyle Meyer <kyle@kyleam.com>
Date: Fri, 3 Jun 2016 00:20:19 -0400
Subject: Add snakemake-recompile-no-dryrun command

---
 init.el              |  5 +++++
 lisp/km-snakemake.el | 42 ++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 47 insertions(+)
 create mode 100644 lisp/km-snakemake.el

diff --git a/init.el b/init.el
index 649632e..e4cc273 100644
--- a/init.el
+++ b/init.el
@@ -1822,6 +1822,11 @@
     (magit-change-popup-key 'snakemake-popup :action
                             ?p ?o)))
 
+(use-package km/snakemake
+  :defer t
+  :init
+  (define-key km/compile-map "l" #'km/snakemake-recompile-no-dryrun))
+
 (use-package ess-site
   :mode ("\\.[rR]\\'" . R-mode)
   :config
diff --git a/lisp/km-snakemake.el b/lisp/km-snakemake.el
new file mode 100644
index 0000000..4b9c1fb
--- /dev/null
+++ b/lisp/km-snakemake.el
@@ -0,0 +1,42 @@
+;;; km-snakemake.el --- Snakemake extensions
+
+;; Copyright (C) 2012-2016 Kyle Meyer <kyle@kyleam.com>
+
+;; Author: Kyle Meyer <kyle@kyleam.com>
+;; URL: https://github.com/kyleam/emacs.d
+
+;; This program is free software; you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <http://www.gnu.org/licenses/>.
+
+;;; Code:
+
+
+(require 'compile)
+(require 'snakemake)
+
+;;;###autoload
+(defun km/snakemake-recompile-no-dryrun ()
+  "Recompile last Snakemake call, removing --dryrun."
+  (interactive)
+  (unless (buffer-live-p compilation-last-buffer)
+    (user-error "No previous compile command found"))
+  (with-current-buffer compilation-last-buffer
+    (let ((command (car compilation-arguments)))
+      (if (string-prefix-p snakemake-program command)
+          (setf (car compilation-arguments)
+                (replace-regexp-in-string "--dryrun" "" command))
+        (user-error "Last compile was not with %s" snakemake-program)))
+    (recompile)))
+
+(provide 'km-snakemake)
+;;; km-snakemake.el ends here
-- 
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