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authorKyle Meyer <kyle@kyleam.com>2014-02-08 00:41:00 -0500
committerKyle Meyer <kyle@kyleam.com>2014-02-08 00:41:00 -0500
commit44415bcb8bca4814ecc3e4a34baa2999a5e3103a (patch)
tree8974dba9ccb6a34f67b3b5022c52af42063c8098 /README.org
parent8f4381025f64ff2ab59c60b65dc5ac42c9276a5b (diff)
downloadbog-44415bcb8bca4814ecc3e4a34baa2999a5e3103a.tar.gz
DOC: Make text version Github's preferred README
GitHub will choose README.org over README, which is not what I want because the README text file is exported because GitHub doesn't render Org files very well. These changes rename the Org README so that the text version will be displayed on GitHub.
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-#+title: Bog
-
-Bog is a system for taking research notes in [[http://orgmode.org/][Org mode]]. As any Org user
-knows, Org handles notetaking beautifully. Bog just adds a few
-research-specific features, nearly all of which are focused on managing
-and taking notes with Org, not on writing research articles with Org.
-
-* Bog workflow
-
-Many people use Org for taking research notes, and there are some really
-nice descriptions of systems people have come up with (for a few
-examples, see [[http://thread.gmane.org/gmane.emacs.orgmode/78983][these]] [[http://thread.gmane.org/gmane.emacs.orgmode/14756][threads]] on the Org mode mailing list).
-
-The workflow for Bog is based on these preferences:
-
-1. I don't want to store a lot of metadata with my notes.
-
- The citekey is the unique identifier that I use to link the notes
- with the BibTeX and PDF files. With just the citekey, I should be
- able to access this. If desired, more information can be added (such
- as bibliographic properties that can be generated with org-bibtex),
- but this is not required.
-
- One of the reasons for this is #2.
-
-2. I want to have low friction for adding articles to the notes, but not
- mindless.
-
- There is an endless stream of research articles, so it should be easy
- to add them. On the other hand, it shouldn't be so easy that I file
- them away without giving them any thought. For me, this means
- capturing the article and a link in my normal Org notes system. At
- some point, I glance over it enough to decide what general topic it
- should be in and refile it into a research notes file.
-
- I prefer adding BibTeX and PDF files lazily. My only requirement is
- that I put it in a relevant heading and that I name it with a proper
- citekey. I make sure to add a link to the study online. I only
- retrieve the BibTeX file or PDF file when I need to use them.
-
-* Features
-
-** Adding citekeys to notes
-
-As mentioned above, when citekeys are added, they should be filed under
-the appropriate topic. I organize my research notes into a few files
-with broad topics then have one level of headers representing topics to
-file studies under.
-
-#+begin_example
- # In a very general topic file
-
- ,* Topic heder
-
- ,** name2000word :atag:
-
- <URL for study>
-
- Article notes
-#+end_example
-
-"name2000word" is the study header. Bog expects the study citekey to be
-the title or property of a heading.
-
-The default format for the citekey is the first author's last name, the
-year, and then the first non-trivial word. To have BibTeX mode
-automatically generate a key of this format, the =bibtex=autokey-*=
-settings can be modified.
-
-#+begin_src emacs-lisp
- (setq bibtex-autokey-year-length 4
- bibtex-autokey-titleword-length nil
- bibtex-autokey-titlewords-stretch 0
- bibtex-autokey-titlewords 1
- bibtex-autokey-year-title-separator "")
-#+end_src
-
-If the study was added when checking journals online, I tend to add the
-URL right under the heading. However, I often add citekeys from the
-references of an article that I'm reading. In this case, I often store
-only the heading.
-
-** Referencing studies within notes
-
-You can reference other studies with their citekey.
-
-#+begin_example
- ,** name2000word :atag:
-
- Another study (another1999word).
-#+end_example
-
-"another1999word" will be highlighted within the text. When the point is
-within the citekey, many Bog functions can extract and use the citekey.
-
-** Opening a PDF file for a citekey
-
-All PDF files are kept in a single directory and are named as
-<citekey>-*.pdf. The function =bog-find-citekey-pdf= will open a PDF
-associated with a citekey. If the point is on a citekey, it will open
-that citekey. Otherwise, it will use the citekey from the first parent
-heading that is a study.
-
-** Opening a BibTeX file for a citekey
-
-The function =bog-find-citekey-bib= will open the BibTeX entry
-associated with a citekey.
-
-The citekey is obtained in the same way as the [[Opening%20a%20PDF%20file][PDF citekey]].
-
-BibTeX entries can be stored in one of two ways:
-
-1. As a single file with many entries
-2. As single-entry files named <citekey>.bib within a common directory
-
-** Searching online for a citekey
-
-The function =bog-search-citekey-on-web= will perform a search with the
-citekey information. By default, Google Scholar is searched. The default
-citekey format (first author's last name, year, and first non-trivial
-word) usually contains enough information to make this search
-successful.
-
-** Renaming a new PDF
-
-New PDF files can be put in a "stage" directory and then renamed to a
-citekey. (The citekey can be taken from the notes context, as described
-in [[Opening%20a%20PDF%20file][Opening a PDF file]].)
-
-** Renaming a new BibTeX file
-
-If a separate BibTeX file is used for each citekey,
-=bog-rename-and-clean-new-bib-files= can be used to rename all new
-BibTeX files. =bibtex-clean-entry= is used to clean the entry and
-autogenerate the key.
-
-** Generating a combined BibTeX file
-
-If single-entry BibTeX files are used, there needs to be a way to
-collect the references that are needed. =bog-create-combined-bib= can be
-used to create a BibTeX file that has entries for all the citekeys in
-the current buffer.